As we know there is no configuration wizard to delete the existing domains. So you can delete the domains using below mentioned manual steps :
I am going to delete the domain "mycustomdomain" -
1. Open the domain-registry under $Middleware_HOME directory. Remove the entry referring to mycustomdomain
Code Snippet in domain-registry.xml
<domain location="C:\Oracle\Middleware\user_projects\domains\mycustomdomain"/>
2. Open nodemanager.domains file under $Middleware_HOME\wlserver_10.3\common\nodemanager\ folder. Remove the corresponding entry referring to mycustomdomain.
Code Snipper in nodemanager.domains
mycustomdomain=C\:\\Oracle\\Middleware\\user_projects\\domains\mycustomdomain
3. Delete the domain folder under domains folder manually.
$Middleware_Home\user_projects\domains\mycustom_domain
4. Delete the domain folder under applications folder manually.
$Middleware_Home\user_projects\applications\\mycustom_domain
I am going to delete the domain "mycustomdomain" -
1. Open the domain-registry under $Middleware_HOME directory. Remove the entry referring to mycustomdomain
Code Snippet in domain-registry.xml
<domain location="C:\Oracle\Middleware\user_projects\domains\mycustomdomain"/>
2. Open nodemanager.domains file under $Middleware_HOME\wlserver_10.3\common\nodemanager\ folder. Remove the corresponding entry referring to mycustomdomain.
Code Snipper in nodemanager.domains
mycustomdomain=C\:\\Oracle\\Middleware\\user_projects\\domains\mycustomdomain
3. Delete the domain folder under domains folder manually.
$Middleware_Home\user_projects\domains\mycustom_domain
4. Delete the domain folder under applications folder manually.
$Middleware_Home\user_projects\applications\\mycustom_domain